rs45999542 SNP Detail

Summary

• ID
  rs45999542
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84208435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCGAGGGA GGCCTGTCCA
  TCAGCCACCT GTGCAAGCGG AGTGGGGGAA GTGCGGTAAG TGCTATTCCA CGCTGCCTCC
  CTCTCCAGGT TCTGGGCCCC CAACAGAGGC TAGGAGTGGC TGGCTGCCAG GCCCTCCATA
  CTTAAAGGCC TGGAAAAACC AGCCAGTGCC TAAGGTCTCC ATGCCAGGAG GGAGGATTAC
  K
  GAGCTGGGGT GCAGATGGTG GGAACCAGCC TTCACGGTCC ACCTCTGCAC AGTGGCTTTC
  CTGCTGGATG GTCCCCAGAC CTCCCAGATC TAAGGCCCTC CCTGGCCACC TTCATATCTC
  CCTTAACAGT GCTGTTGGAT TGGGGGCCAG CTTTATGCTT CCATGATCCT CAGCTTCTTC
  CTAAAGGGAC CCTGAATATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60904832	NES15950968	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45999542					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904832	NES15950968	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84208435 () rs orientation: forward

Symbol	Name	Function Class
Gm44127	predicted gene, 44127	within coordinates
Rr633014	regulatory region 633014	992 bp distal
Rr633015	regulatory region 633015	278 bp distal
Rr633016	regulatory region 633016	within coordinates