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rs45978586 SNP Detail
Summary
  • ID
    rs45978586
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr6:17078307 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGGCTGGGA TAGTCTTATC
    TCCCTCCTGT AGTCAGAGGT ATGGAAGGAG TCATGGTGGT GACTTTCTTC AACTCTGAAT
    TACGTATACA GTCTAATATT CTGTGAACAG GGAAGAGTCA AAGAAGAATG GAGCATAGCT
    TCGGGACATG GGAGTGGCCC CTCTAATCAC TTAACTTTAG TTTCTTTTTT TGTTCCACCA
    W
    GGTAAAGAGA GATTGAATTA GCATGCAACT GAAATTTGAT AGTAGCTGTA AGTAGAGTGT
    ATATGCATGC TTGGAAGTGT GGACACTATG CCCCTCCTTA GATTTGGGAA CAAAACACCC
    ATGGAAGGAG TTACAGAGAC GGAGTTTGGA GCTGAGATGA AAGGATGGAC CATCTAGAGA
    CTGCCATATC CAGGGATCCA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss133009898 ENSMUSSNP1860671 ENSEMBL ENSEMBL_Sanger f SNP T A A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs45978586 SNP T A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:17078307 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm4876 predicted gene 4876 within coordinates
Rr626760 regulatory region 626760 330 bp distal
Rr626761 regulatory region 626761 884 bp proximal
Tes testin LIM domain protein Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory