rs45978586 SNP Detail

Summary

• ID
  rs45978586
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17078307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTGGGA TAGTCTTATC
  TCCCTCCTGT AGTCAGAGGT ATGGAAGGAG TCATGGTGGT GACTTTCTTC AACTCTGAAT
  TACGTATACA GTCTAATATT CTGTGAACAG GGAAGAGTCA AAGAAGAATG GAGCATAGCT
  TCGGGACATG GGAGTGGCCC CTCTAATCAC TTAACTTTAG TTTCTTTTTT TGTTCCACCA
  W
  GGTAAAGAGA GATTGAATTA GCATGCAACT GAAATTTGAT AGTAGCTGTA AGTAGAGTGT
  ATATGCATGC TTGGAAGTGT GGACACTATG CCCCTCCTTA GATTTGGGAA CAAAACACCC
  ATGGAAGGAG TTACAGAGAC GGAGTTTGGA GCTGAGATGA AAGGATGGAC CATCTAGAGA
  CTGCCATATC CAGGGATCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133009898	ENSMUSSNP1860671	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45978586					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17078307 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm4876	predicted gene 4876			within coordinates
Rr626760	regulatory region 626760			330 bp distal
Rr626761	regulatory region 626761			884 bp proximal
Tes	testin LIM domain protein			Intron
				Noncoding-Transcript-Variant