rs45976219 SNP Detail

Summary

• ID
  rs45976219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121084942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGGTTTCC AATCCTCCCA GGAATATGAC ATAGCTTGAA
  GTGATCCGGA TTCTGGTTAT AGTTTGAGAT CTGTGAAACT GTCTAGAAAA CATAAATGTC
  R
  GGAAAGGGCG GATTTGAATG TTTTCCCCCT AAGAGTATGC CTCTGACTGG CAAAAATTTT
  CTAGTTCGGT TTGTCTTGGA ACCCGTAAGG AAGAAAGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135717669	ENSMUSSNP2761151	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45976219					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121084942 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	480 bp upstream
Cpgi13756	CpG island 13756	189 bp proximal
Gm56787	predicted gene, 56787	within coordinates
Rr367543	regulatory region 367543	245 bp upstream
Rr375663	regulatory region 375663	1016 bp downstream
Rr584038	regulatory region 584038	within coordinates
Rr584039	regulatory region 584039	330 bp proximal
Rr584040	regulatory region 584040	538 bp proximal
Tssr31434	transcription start site region 31434	432 bp upstream
Tssr31435	transcription start site region 31435	528 bp upstream
Tssr31436	transcription start site region 31436	558 bp upstream
Tssr35412	transcription start site region 35412	305 bp downstream