rs45966550 SNP Detail

Summary

• ID
  rs45966550
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125901963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCAGCTG CTTTGTCCCA
  GGTCATTGTA CAAGTGAGAA CATGGGCTGT AATGTTCAGG AGCCTTCAGT CCTTTCCATC
  TGGACAGGCT ATGAGAAGTC TAGATTGAAG AAAGAACTGT TCAGATGAGG GCTCCAAGAC
  GGGGCTTCTG GAGGACAACT GTACTCTGAG GTATCGTGCT CAGGCCTTCA GTCCCACCAG
  S
  TCAAGTAGCT TTCCTATCCC GTGTCTGGCA CTACAGATGC CAAATACACA GACAGTAGAG
  GGATGGTGTA TCCGTAACAT GTTTGTTACT GTCTCACTTT GTGTGTAAAG CAAGGTCGAC
  CTGCACTTGT CTATTGGTTG TATATTATTC TATACTCTAC AGTGTGTGGG GAAAACGTAT
  CTAAAGCAAA GCTTTGGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147494488	ENSMUSSNP4718612	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45966550					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125901963 () rs orientation: forward

Symbol	Name	Function Class
Fam227b	family with sequence similarity 227, member B	Intron
Fgf7	fibroblast growth factor 7	Intron
Rr564314	regulatory region 564314	591 bp proximal