rs45950944 SNP Detail

Summary

• ID
  rs45950944
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:47055750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAAACTG TTTTTAACCT
  ACCACTGATG TATGTCAATA TATTCAATAT TAATTTTAAA GATCCAACTA TAACTATATA
  AACAATTCTA ACATTGTTGT ATCACTGATG TCTACATTTT TAAAAACACA CCCTTGTACA
  GTAGCATATA CCTGCAATCC CAGAATGTGG CTCTCAGGAA CTGCAGGTCA CCCTCAGCTA
  M
  CCGGCAAGCT GAAAGCCAGC TTAGCCTTCA TCATACCCTG TTTTTAAAAA ATATAAAAAA
  ATAGCCGGGT GAAGGTGGTG CACCACTTTG ATGCCAGCAT TCAGAAGGCA GAAGGAGGTG
  GATCTCTCTA AGTTTGAGGG AAGCCTGGTC TATAGAGCGA GTTTTAGAAA GGCCAGGCCT
  ACAAGGAGAA ACCCTGACTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148981258	ENSMUSSNP602236	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45950944					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47055750 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22960	predicted gene, 22960			317 bp upstream
Kif13a	kinesin family member 13A			Intron
				Noncoding-Transcript-Variant
Rr478995	regulatory region 478995			1097 bp distal
Rr478996	regulatory region 478996			489 bp proximal
Rr478997	regulatory region 478997			595 bp proximal