rs45896619 SNP Detail

Summary

• ID
  rs45896619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148214571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT CCGGGGGGCG TCGTTGAAAG
  R
  GACAGAGGCG CCCTGGTCAG CTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147993964	ENSMUSSNP5304842	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321417524	CHEV_4_147504223	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45896619					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148214571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15291	CpG island 15291	within coordinates
Draxin	dorsal inhibitory axon guidance protein	Intron
Mad2l2	MAD2 mitotic arrest deficient-like 2	270 bp upstream
Rr604596	regulatory region 604596	within coordinates
Rr604597	regulatory region 604597	6 bp distal
Rr604598	regulatory region 604598	574 bp proximal
Rr604599	regulatory region 604599	812 bp proximal
Tssr1378	transcription start site region 1378	719 bp upstream
Tssr40251	transcription start site region 40251	628 bp upstream
Tssr40252	transcription start site region 40252	661 bp upstream
Tssr40253	transcription start site region 40253	769 bp upstream
Tssr44585	transcription start site region 44585	524 bp downstream
Tssr44586	transcription start site region 44586	537 bp downstream
Tssr44587	transcription start site region 44587	564 bp downstream