rs45886661 SNP Detail

Summary

• ID
  rs45886661
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142325019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTTTTA TCTTTCTTTT
  GCTGCTATGA CATGATTTGC ATATCTCTGA AGATAAATGC CTTTTACAAT GTGGCAGAAG
  CACTGTTTAA GTGAAAACTG TTAATAAAAA TGATTAAGCT TACCATAATT GTTTCAAGTG
  CATGCTGTAC ATTGTTCATA ATGTAAGAAA CGCCGCTCCT AAATTTCTGT AAGAGGGGAG
  K
  TCATTAGAAG ACTCTTAGCT GTCACACAGG CACCCAATGA TGAGGGGTTC AGCTCTGCAA
  CTGAACATTC AGAATAACAG TAGTACCACA CAGAGGAAAT GTCACAGTCA CGGGGCTTAG
  TACTCTTGTG GAATACAGAA ACACAAAGAT ACTTTCTGTA TAATTATTTT CTGGTAGTGG
  CATTAAACCC AGGGCTTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136016080	ENSMUSSNP6823703	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45886661					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142325019 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1405 bp upstream
Gbp2b	guanylate binding protein 2b	79 bp downstream
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	624 bp upstream
Rr586457	regulatory region 586457	282 bp distal
Rr586458	regulatory region 586458	854 bp proximal
Rr586459	regulatory region 586459	1355 bp proximal
Tssr32216	transcription start site region 32216	1073 bp downstream
Tssr32217	transcription start site region 32217	1035 bp downstream
Tssr32218	transcription start site region 32218	981 bp downstream
Tssr32219	transcription start site region 32219	944 bp downstream
Tssr32220	transcription start site region 32220	930 bp downstream
Tssr32221	transcription start site region 32221	912 bp downstream
Tssr32222	transcription start site region 32222	856 bp downstream
Tssr32223	transcription start site region 32223	799 bp downstream
Tssr32224	transcription start site region 32224	745 bp downstream
Tssr32225	transcription start site region 32225	407 bp downstream
Tssr32226	transcription start site region 32226	367 bp downstream
Tssr32227	transcription start site region 32227	1338 bp upstream
Tssr32228	transcription start site region 32228	1389 bp upstream
Tssr32229	transcription start site region 32229	1428 bp upstream
Tssr32230	transcription start site region 32230	1464 bp upstream
Tssr32231	transcription start site region 32231	1481 bp upstream
Tssr35947	transcription start site region 35947	77 bp upstream