rs45883933 SNP Detail

Summary

• ID
  rs45883933
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138920058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTAGACCCA GTCCCTCCGG AACGCCACAG CCCTGGCCGC
  GCAGGAGCGT TGCGCCTGGC CCGCCCCTCC TGAGACAGGA CACGCCCACT CGACCACAGG
  K
  CCTGCCCCCG TCCCCGCCCC CCGCGCGGCG CTCCATACTT GGCGATCGCT GCGGCCCCGC
  GCTCTCATTG GTCGGGAGCT GGCGGCTGGG GGGCGGGTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147667623	ENSMUSSNP117870	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45883933					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138920058 () rs orientation: forward

Symbol	Name	Function Class
9530077C14Rik	RIKEN cDNA 9530077C14 gene	within coordinates
Capzb	capping actin protein of muscle Z-line subunit beta	152 bp upstream
Rr377279	regulatory region 377279	within coordinates
Rr603133	regulatory region 603133	41 bp distal
Rr603134	regulatory region 603134	within coordinates
Rr603135	regulatory region 603135	188 bp proximal
Rr603136	regulatory region 603136	350 bp proximal
Tssr39900	transcription start site region 39900	170 bp upstream
Tssr39901	transcription start site region 39901	195 bp upstream
Tssr39902	transcription start site region 39902	219 bp upstream
Tssr39903	transcription start site region 39903	487 bp upstream
Tssr39904	transcription start site region 39904	532 bp upstream
Tssr39905	transcription start site region 39905	562 bp upstream
Tssr39906	transcription start site region 39906	1339 bp upstream
Tssr44214	transcription start site region 44214	279 bp upstream
Tssr44215	transcription start site region 44215	110 bp upstream
Tssr44216	transcription start site region 44216	89 bp upstream
Tssr44217	transcription start site region 44217	29 bp upstream
Tssr44218	transcription start site region 44218	1249 bp downstream