rs45882886 SNP Detail

Summary

• ID
  rs45882886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95858591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCC CGCCCCATCC CTTGTCAGAG
  Y
  TCCCGTGCAT GCGCAGTCGC GCCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135513191	ENSMUSSNP5361906	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320841250	CHEV_3_95755202	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs45882886					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95858591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	within coordinates
Gm56819	predicted gene, 56819	within coordinates
Gm65572	predicted gene, 65572	49 bp upstream
Rr375411	regulatory region 375411	within coordinates
Rr581095	regulatory region 581095	within coordinates
Rr581096	regulatory region 581096	2 bp proximal
Rr581097	regulatory region 581097	60 bp proximal
Rr581098	regulatory region 581098	1819 bp proximal
Tssr30663	transcription start site region 30663	193 bp downstream
Tssr30664	transcription start site region 30664	28 bp upstream
Tssr34570	transcription start site region 34570	243 bp upstream