rs45873281 SNP Detail

Summary

• ID
  rs45873281
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:107170105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA AGGCAATTTT ATTATTAATG
  A
  ATTTTTTATT TGCAGTAGAA AAATA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145160367	ENSMUSSNP5337305	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss324518090	CHEV_13_107823677	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45873281					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:107170105 () rs orientation: forward

Symbol	Name	Function Class
3830408C21Rik	RIKEN cDNA 3830408C21 gene	79 bp downstream
Rr389031	regulatory region 389031	233 bp upstream
Rr485591	regulatory region 485591	297 bp proximal
Rr485592	regulatory region 485592	683 bp proximal
Tssr120950	transcription start site region 120950	687 bp upstream