rs45866945 SNP Detail

Summary

• ID
  rs45866945
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117466719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCACTCAC TGTCTGCTTC CTGCTCCCTC ACCCTCCGTG
  CTGCTGCTTC ACACACACTG GTATTTAAAT CTGATGGGCT GCTTATAGAC TTCTTGTACC
  A
  TGACAAGTTT GGGGAGGGGG TTGGGGAGGA GGAGACAGAC AAGGAGCCAG CTGTCATGCT
  GGTATTTCAG ACACTACTTT CTCCTGACCC TTTGCAGGC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147290186	ENSMUSSNP1162574	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs45866945					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117466719 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eri3	exoribonuclease 3			Intron
				Noncoding-Transcript-Variant
Rr598174	regulatory region 598174			816 bp distal
Rr598175	regulatory region 598175			within coordinates
Rr598176	regulatory region 598176			1927 bp proximal
Tssr38625	transcription start site region 38625			222 bp upstream
Tssr38626	transcription start site region 38626			1301 bp upstream