rs45860951 SNP Detail

Summary

• ID
  rs45860951
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138784003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC ATGGGCACCA TGCATTCACG
  Y
  GGTACACAGA AATACTCTGT AGCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135960434	ENSMUSSNP470464	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320982569	CHEV_3_138741206	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45860951					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138784003 () rs orientation: forward

Symbol	Name	Function Class
Gm56773	predicted gene, 56773	1701 bp downstream
Rr586244	regulatory region 586244	1655 bp distal
Rr586245	regulatory region 586245	21 bp distal
Rr586246	regulatory region 586246	1681 bp proximal