rs45849224 SNP Detail

Summary

• ID
  rs45849224
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90416868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTAGCTG ACCGATCCTC
  CCGCTCGTCA AGCCTGCCCT TTCCTGCCTT TCGTCTGGGC CCCCAGAGCC GGCGCCGCCA
  ACTCCCGCTT GGTGTCCAAA ACAAAATGGC CGCCGGGCCC ACCAGTGCAG CGTGACCGGC
  TAAAATGGCG CCGACGGGCT TGCGTCAGTG CGCGCGCAAC TAGGGGCGTG GCAACATGGT
  S
  CTTTGGCCTA GCGCAAGAAT CGCAGCGAAT CCCCACTGAC TTTGGCAAAG ATCCCTTAAG
  TTACGTGTAG TGCTCCGCCT TCGGGGGCGT GGCCAGTGGC CGTAATCGCT AAGTACCTCT
  AGACTACCTT CTGGACAAGT TTATGCCCCA CTTTGGTGGG ATTTTTGGCT TGCAAATAGC
  AGCTTAGATT GGCAACAGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss60424396	NES15924218	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs45849224					SNP	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424396	NES15924218	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90416868 () rs orientation: forward

Symbol	Name	Function Class
Chtop	chromatin target of PRMT1	Noncoding-Transcript-Variant
Cpgi13465	CpG island 13465	within coordinates
Gm56783	predicted gene, 56783	within coordinates
Rr375350	regulatory region 375350	1819 bp upstream
Rr397813	regulatory region 397813	within coordinates
Rr580381	regulatory region 580381	455 bp distal
Rr580382	regulatory region 580382	638 bp distal
Rr580383	regulatory region 580383	within coordinates
S100a1	S100 calcium binding protein A1	1473 bp downstream
Tssr30207	transcription start site region 30207	456 bp downstream
Tssr30208	transcription start site region 30208	79 bp upstream
Tssr34236	transcription start site region 34236	1498 bp upstream
Tssr34237	transcription start site region 34237	830 bp upstream
Tssr34238	transcription start site region 34238	55 bp upstream
Tssr34239	transcription start site region 34239	33 bp upstream
Tssr34240	transcription start site region 34240	1572 bp downstream