rs45848450 SNP Detail

Summary

• ID
  rs45848450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52164048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCTGCA CAGACCCCGT
  TCTACCTGAC TTTAAATTAA ATGCATCATG TTTTTGTTGT TGTTATACAA TTTCTTTAGC
  TGCTTTTTCA CGTGTCTTCC CCCAAATTGA CGGAAACGGG AAGTGGCAGC ATTAAATAGA
  GGGAGGTGAG CCATTTCAGG AACACAGATG TCTCTTCAGC AGGATCCAAC TCAAGAAAGG
  Y
  CTTGGATCTT CTGAGGGTCA AAAGGAGCTT TCTGTGCCAC TTGCATGATT TCTGCATCAC
  AACGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TATGTGTGGT GTGTGTGTGT
  GTGTGTGTAT GTGTGGTGTG CGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TATGTGTGTA
  TGTGTGGTGT GTGTGTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60410296	NES15916456	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45848450					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410296	NES15916456	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52164048 () rs orientation: forward

Symbol	Name	Function Class
Gm30125	predicted gene, 30125	131 bp downstream
Gm38132	predicted gene, 38132	118 bp downstream
Gm66188	predicted gene, 66188	215 bp upstream
Rr374956	regulatory region 374956	1633 bp downstream
Rr576482	regulatory region 576482	974 bp proximal
Rr576483	regulatory region 576483	1205 bp proximal
Rr576484	regulatory region 576484	2000 bp proximal