rs45820937 SNP Detail

Summary

• ID
  rs45820937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167120731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAGCAAA TACTAAATTA
  AATATTTGAG TACTTTGGTG TTTGTTTGTT TGTTTTCATA TGTATCAGTA TTTTTTTTCT
  TCATGTACCT TGAGGCTTTC TTTTTGTAGT CAGGGTCTTA CTATATCTTT GACTGCCTCA
  ATTTCATTAT TCTCAGCCTC TCAAGAATCA CAATTGCCGG GCGTGGTGGC GCACGCCTTT
  R
  ATCCCAGCAC TTGGGAGGCA GAGGCAGGTG AATTTCTGAG TTCGAGGCCA GCCTGGTCTA
  CAAGGTGAGT TCTAGGACAG CCAGGGCTAT ACAGAGAAAC CCTGTCTCAA AACAAAAAAA
  CAACAAGCAT GCCGGGCGTG GTAGCGCACA TCTTTAATCC CAGCACTTGG GAGGGAGAAG
  CAGGTGAATT TCTGAGTTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146036457	ENSMUSSNP5152834	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45820937					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167120731 () rs orientation: forward

Symbol	Name	Function Class
D1Mit145	DNA segment, Chr 1, Massachusetts Institute of Technology 145	1884 bp proximal
Gm57182	predicted gene, 57182	within coordinates
Rr422673	regulatory region 422673	209 bp distal