rs45728043 SNP Detail

Summary

• ID
  rs45728043
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95857292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCTGCA GTGATCTCCC
  AGGCTGTTGT ACACTGGAGA AAATTGAATG GCTGAAAATC AGTTATTGCT TCTAATCATG
  GCGGTAGATG CACTGTTCTC CCTGACACTG TCCAGCTTGG TGATGGGGAA GGACATGGTG
  GTTCTGATTC TTTTTAGGAC GCTTCATTGA TGCCCTGCTT GGCTCTTCTT GGAACCGAAT
  T
  TTGACTTTCA GGCACAATAC CACCTCCTCA GCTTTGGGTC TTCCTTTAAA CTCTGTTCCT
  TCTAACTCTT TTAGAGCATT GTTCTGCCAT TTATTTTCTT TTTGCTGTTG AATCTGTCTA
  ACCCTGACCC CCAACTAAAC AAGGGATCTC TGCATGTGCT CTTCTGATGG AGCTGTGTCC
  TCAACCTCCT TTTTACTTAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147069074	ENSMUSSNP4994642	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45728043					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95857292 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530080O11Rik	RIKEN cDNA 9530080O11 gene			1400 bp upstream
Cpgi14458	CpG island 14458			1124 bp distal
Hook1	hook microtubule tethering protein 1			Intron
				Noncoding-Transcript-Variant
Rr398349	regulatory region 398349			1792 bp downstream
Rr595500	regulatory region 595500			1676 bp distal
Rr595501	regulatory region 595501			910 bp distal
Tssr37834	transcription start site region 37834			1910 bp downstream
Tssr37835	transcription start site region 37835			1735 bp downstream
Tssr37836	transcription start site region 37836			1674 bp downstream
Tssr37837	transcription start site region 37837			1652 bp downstream
Tssr37838	transcription start site region 37838			1629 bp downstream
Tssr37839	transcription start site region 37839			864 bp upstream
Tssr37840	transcription start site region 37840			895 bp upstream