rs45716464 SNP Detail

Summary

• ID
  rs45716464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78794531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC CTGACCTTGG AGAGCTGGGA
  Y
  GTCAGGCAGT GTGCAGGGCT CTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148190101	ENSMUSSNP213375	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss325025948	CHEV_15_78740761	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45716464					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78794531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700027A07Rik	RIKEN cDNA 1700027A07 gene			1632 bp downstream
Gm49510	predicted gene, 49510			Intron
Rr505451	regulatory region 505451			1627 bp distal
Rr505452	regulatory region 505452			1765 bp proximal
Rr505453	regulatory region 505453			1900 bp proximal
Sh3bp1	SH3-domain binding protein 1			Intron
				Noncoding-Transcript-Variant
Tssr132009	transcription start site region 132009			1861 bp downstream
Tssr132010	transcription start site region 132010			1157 bp upstream