rs45704306 SNP Detail

Summary

• ID
  rs45704306
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132442367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG AGGGGCAGGG AGGGGAATGT
  M
  TGCGATACCA GCACCTAAGA GGTAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147621239	ENSMUSSNP6237021	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320509487	CHEV_2_132426183	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs45704306					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132442367 () rs orientation: forward

Symbol	Name	Function Class
AU019990	expressed sequence AU019990	within coordinates
Gm75202	predicted gene, 75202	within coordinates
Rr565499	regulatory region 565499	1999 bp distal
Rr565500	regulatory region 565500	904 bp distal
Rr565501	regulatory region 565501	within coordinates
Rr565502	regulatory region 565502	1405 bp proximal
Tssr663	transcription start site region 663	922 bp downstream
Tssr20313	transcription start site region 20313	985 bp downstream
Tssr26480	transcription start site region 26480	721 bp downstream