rs45695292 SNP Detail

Summary

• ID
  rs45695292
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172042353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTC ATTGGCTGAC ACTCCCTAAG
  M
  AGCCCCTCAG TCCACACACA TTTAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007506	PARCsnp_1.17831	PARC_SEQ	INBRED	f	SNP		A	C
ss120010417	PARCsnp_1.07476	PARC_SEQ	INBRED	f	SNP		A	C
ss146184107	ENSMUSSNP1712936	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320123277	CHEV_1_174144917	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs45695292					SNP	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172042353 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	Intron
Gm17224	predicted gene 17224	1100 bp downstream
Rr423487	regulatory region 423487	780 bp distal
Rr423488	regulatory region 423488	1794 bp proximal
Tssr15176	transcription start site region 15176	1711 bp upstream
Tssr15177	transcription start site region 15177	1657 bp upstream
Tssr15178	transcription start site region 15178	1624 bp upstream
Tssr15179	transcription start site region 15179	1608 bp upstream
Tssr15180	transcription start site region 15180	1388 bp upstream
Tssr15181	transcription start site region 15181	825 bp upstream
Tssr15182	transcription start site region 15182	254 bp downstream
Tssr15183	transcription start site region 15183	1195 bp downstream