rs45683427 SNP Detail

Summary

• ID
  rs45683427
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84576015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CCGGCTTTGT TTGTTTTTTT AATGTTGCTG TTTAATATGC
  AAGGTATGTG GGGGACATGC ATGGAGGTCA GACGACAACT AAGATTGGTT TTGTCCTTCC
  M
  CCATGAAGAA ACTGTTTTTT TTTTTTTTAA CAAGGCTAAA AACCAAGATG TTGCTGGGCT
  TGGTTGCAAC AATCCTGTAG CCTCAGCATT TAGGAGACAA A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146834290	ENSMUSSNP2712773	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45683427					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84576015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11865	CpG island 11865	1702 bp distal
Gm19426	predicted gene, 19426	1070 bp upstream
Gm57423	predicted gene, 57423	1083 bp downstream
Rr373462	regulatory region 373462	662 bp downstream
Rr560324	regulatory region 560324	1973 bp distal
Rr560325	regulatory region 560325	1772 bp distal
Rr560326	regulatory region 560326	1266 bp distal
Rr560327	regulatory region 560327	855 bp distal
Tssr18681	transcription start site region 18681	1762 bp downstream
Tssr25039	transcription start site region 25039	1970 bp upstream
Tssr25040	transcription start site region 25040	1907 bp upstream
Tssr25041	transcription start site region 25041	1888 bp upstream