rs45670379 SNP Detail

Summary

• ID
  rs45670379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108132429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTGGCC TGCAGCCCAT
  TAGGATCTCA GATACCCAGA GACAATCCCA AATGCCCTCC AGATTTGATG ATTTCCATCC
  AAACCACAAT TACTTAGGAT TTAGTGACAT CGTGCTAAGT CCTATCTCCT GTGAATTCAA
  AGATCTTTAG AACTTGGTTC TCTTGGATAT TAAGGGTAAA TTGGTCCCTA GCTGAATCCA
  R
  TGCTTGAGGG TACAGTAATA ACTTCATATA GAATCTGGTA TATGGCTTGT CTAACAAAAT
  CTTTTCTGCA AGAATGCACA AAATGTTCCC CAAATCTTTA TGATTTGAAA TGCTGGCTGC
  ATCTCAAGGA CCAGTGAAAC AAGCCAGTAT TCCCACTAGA CCAGAGAAGG GGAAACTGAG
  GCCATGGGCC GGTGAATGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss135585500	ENSMUSSNP5477960	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs45670379					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108132429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13695	CpG island 13695	724 bp proximal
Gm40123	predicted gene, 40123	1010 bp upstream
Rr583179	regulatory region 583179	520 bp proximal
Rr583180	regulatory region 583180	1525 bp proximal
Rr583181	regulatory region 583181	1614 bp proximal
Sypl2	synaptophysin like 2	Intron
Tssr35135	transcription start site region 35135	1460 bp downstream
Tssr35136	transcription start site region 35136	1485 bp downstream