rs45667765 SNP Detail

Summary

• ID
  rs45667765
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38937905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCATTGCC CTTTTTTTTT
  TTATTAAAGC GAAGACTATA CACTTATTTC ACAGATTAAA CACTCCATTC TACAGAATGA
  ATTCAATTAC CTGTTTTCTC AACTTAAATT CACTGGCAAG AGATGTTAAT TCCATTCTGT
  TGAGCTGCGA AGGCATTTTG CATGCTCCCC GACAGACACC AGGCAGACCA GCAAAAATCC
  G
  CGGTCTTCCC CCAATATATC CGAGTGGTTT CCTCCCATTT TTATGTGATG GAGTAGTGAA
  CTGCGCAGGA TTAGCAAACA AAACTAAAGT CTTCTACAGT GTTCACACTC TCATAGCTGC
  GGTTTGTAGT CCCTTTGAAC AAACCTTAAT TCACGAATCT TTTCTGGCTT AATTACAGTT
  AAATACTGGG GTGGCGGTGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134846109	ENSMUSSNP3538999	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320724082	CHEV_3_38782678	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45667765					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38937905 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	1226 bp proximal
Gm56780	predicted gene, 56780	1933 bp upstream
Gm65329	predicted gene, 65329	910 bp downstream
Rr575715	regulatory region 575715	439 bp distal
Rr575716	regulatory region 575716	731 bp distal
Rr575717	regulatory region 575717	within coordinates
Rr575718	regulatory region 575718	717 bp proximal
Rr575719	regulatory region 575719	1780 bp proximal
Tssr28930	transcription start site region 28930	1556 bp upstream
Tssr28931	transcription start site region 28931	1927 bp upstream
Tssr28932	transcription start site region 28932	1954 bp upstream
Tssr28933	transcription start site region 28933	1986 bp upstream