rs4152458 SNP Detail

Summary

• ID
  rs4152458
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:3857183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAA AGCCAAACCA AGCCTTCACT
  M
  GCCTTCTCCT ACTCAAGAGG CAGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6314356	mCV25291261_1671632	CRAMUS	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss39462235	mCV25291261	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss147722990	ENSMUSSNP7225588	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		C
ss325088588	CHEV_16_4039319	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4152458					SNP	C	A	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3857183 () rs orientation: forward

Symbol	Name	Function Class
Dnase1	deoxyribonuclease I	Intron
Gm15879	predicted gene 15879	1416 bp upstream
Trap1	TNF receptor-associated protein 1	652 bp downstream
Tssr4779	transcription start site region 4779	1932 bp downstream
Tssr139750	transcription start site region 139750	1437 bp upstream