rs4152456 SNP Detail

Summary

• ID
  rs4152456
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:3855931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG GTGACAGTAC TGGAGTCCTA
  S
  AGTATAATGA CAACCATTTA CAGTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6314354	mCV25290989_1670380	CRAMUS	CRAMUS_MOUSE	f	SNP	C	G	G
ss39419905	mCV25290989	ABI	CRAMUS_MOUSE	f	SNP	C	G	G
ss147722980	ENSMUSSNP3779231	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
ss325088586	CHEV_16_4038067	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4152456					SNP	C	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3855931 () rs orientation: forward

Symbol	Name	Function Class
Dnase1	deoxyribonuclease I	Intron
Gm15879	predicted gene 15879	164 bp upstream
Rr510754	regulatory region 510754	1026 bp distal
Trap1	TNF receptor-associated protein 1	1904 bp downstream
Tssr4779	transcription start site region 4779	680 bp downstream
Tssr136844	transcription start site region 136844	964 bp downstream
Tssr136845	transcription start site region 136845	938 bp downstream
Tssr136846	transcription start site region 136846	915 bp downstream
Tssr136847	transcription start site region 136847	775 bp downstream
Tssr139750	transcription start site region 139750	185 bp upstream