rs4139828 SNP Detail

Summary

• ID
  rs4139828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16715915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATTTCT TTGTGTCTTA
  GCTATCCAAG AACTCTCTTT GTAGACCAGG CTGGCCTCTA ACTCACAGAG ATCCACCTGC
  GCGTGCCTCC TGAGTGCTGG GATTAAAGGC ACGTGCCATC ACTGCCCAGG ACAAGTAGTT
  AGGTTTTGAA TATTTGTTTA TTTAGTGCCA ATCTCACTAC ACAGCCGTCA CTGGATGGAA
  Y
  TTGCTTTGTG AATCTGGCTA TGTAAACTAG GCGGCTTTGA ACTCACAAAG ATCAGCCTTC
  TTCCCTCCTG AATGCTAGGA ATAAAGGTGT TTGGCTCCGC CCTTGGCTAC AGGTACTTAT
  GTGCTACCAA GTGGGTGCTC ACAACCAAAC CCAGGTCCTC TGCAAGAGCA GTCAGTGCTC
  TAAACCACTG AGCCATCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5110607	WI_WGS_7_12121244	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs4139828					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16715915 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	1093 bp upstream
Rr642834	regulatory region 642834	1184 bp distal
Rr642835	regulatory region 642835	606 bp proximal
Tssr64666	transcription start site region 64666	1075 bp upstream
Tssr64667	transcription start site region 64667	1183 bp upstream