rs4139404 SNP Detail

Summary

• ID
  rs4139404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94235979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAA GCACGCGCGC GAGCACGCGC
  R
  CACACACACA CACACACACA CACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5110182	WI_WGS_2_95393246	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs4139404					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94235979 () rs orientation: forward

Symbol	Name	Function Class
2810002D19Rik	RIKEN cDNA 2810002D19 gene	1073 bp upstream
Cpgi11962	CpG island 11962	380 bp proximal
Rr561373	regulatory region 561373	27 bp proximal
Rr561374	regulatory region 561374	498 bp proximal
Rr561375	regulatory region 561375	843 bp proximal
Rr561376	regulatory region 561376	1035 bp proximal
Rr561377	regulatory region 561377	1068 bp proximal
Rr561378	regulatory region 561378	1122 bp proximal
Tssr19003	transcription start site region 19003	1085 bp upstream
Tssr19004	transcription start site region 19004	1129 bp upstream
Tssr25328	transcription start site region 25328	632 bp upstream
Tssr25329	transcription start site region 25329	1013 bp downstream
Ttc17	tetratricopeptide repeat domain 17	Intron