rs39952791 SNP Detail

Summary

• ID
  rs39952791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123179734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTATGCCT GAACAGGAAG TCCCGCCTCC AGGACGCCGA
  AGATATGATG TCACACGACG AGACCCAATG GGGATGTAGT GGTGGTTGAG GGCGAGGAGC
  Y
  GCTTTTGGCT ATCTTCTTAG TGCTTAAAGT CTTTCCTGAA GGGTTAGGCT CGGTTTTTTT
  GTTTTTTGTT TTTCCTGCTC ATAAAAGAAG TTTTTCTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51023262	NES13907561	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T	T	T	C	C		C	C		C
ss135764368	ENSMUSSNP1179169	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320919492	CHEV_3_123089003	CHEVERUD	SCREENING_POP	f	SNP												C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs39952791					SNP	C	C	T	C	T	C	T	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023262	NES13907561	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123179734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	17 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	mRNA-UTR
Rr397990	regulatory region 397990	32 bp downstream
Rr584510	regulatory region 584510	165 bp distal
Rr584511	regulatory region 584511	within coordinates
Tssr35499	transcription start site region 35499	413 bp upstream
Tssr35500	transcription start site region 35500	92 bp upstream
Tssr35501	transcription start site region 35501	75 bp upstream