rs39649394 SNP Detail

Summary

• ID
  rs39649394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120682280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGGGGA GAGACAGAGA
  GAAATAGATG TTGGGACTGA CTGGGAAACA AACCTTAAAA GATGGACAGA GGAGTGGGTA
  GAGGGCAAAG GGGAGAGGGA TGAACAGTGA CAGAAGAAGG GCAATGACAC ACATAAGGAG
  ATGTCATGGA GAGACCTTTC ACTTTGTACG CTGACTTAAA ATTTAGTGAA AGGATCTTTA
  R
  GAAGAAAATT AACTTGAACT GGAAAAGTGA ACAATTCTCT TCAGACAAAC CAGGTTAACA
  AAAGAAGAGA GCTAGAGTAT GGCTACGACA TCGCCACTCC CAAATCTGTT GAATTAGGAC
  TCGGAGAGTA TCTATCCTTT TTGCTACTCT GATACCCTAC AGATAGTTTG AAATTTTATT
  TGGTAACCTT TAACCTAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	MOLF/EiJ	WSB/EiJ
ss51608861	NES14666816	PERLEGEN	MM_PANEL2	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	MOLF/EiJ	WSB/EiJ
rs39649394					SNP	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608861	NES14666816	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120682280 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	1547 bp upstream
Rr583993	regulatory region 583993	1643 bp distal
Tssr35394	transcription start site region 35394	1885 bp upstream