rs39585496 SNP Detail

Summary

• ID
  rs39585496
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42564019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAT TACTCATATT GACAAAGTAT
  W
  TGTTGATCAC CTACTCTATT TAAAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51631341	NES14833078	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs39585496					SNP	T	T	T	T	T	T	T	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631341	NES14833078	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42564019 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			1859 bp downstream
Tssr56047	transcription start site region 56047			1710 bp downstream
Tssr56048	transcription start site region 56048			1114 bp downstream
Tssr56049	transcription start site region 56049			1040 bp downstream
Tssr60620	transcription start site region 60620			1332 bp upstream
Tssr60621	transcription start site region 60621			1312 bp upstream
Tssr60622	transcription start site region 60622			1253 bp upstream
Tssr60623	transcription start site region 60623			1204 bp upstream
Tssr60624	transcription start site region 60624			1177 bp upstream
Tssr60625	transcription start site region 60625			1104 bp upstream
Tssr60626	transcription start site region 60626			1088 bp upstream
Tssr60627	transcription start site region 60627			1079 bp upstream
Tssr60628	transcription start site region 60628			913 bp upstream
Tssr60629	transcription start site region 60629			873 bp upstream
Tssr60630	transcription start site region 60630			805 bp upstream
Tssr60631	transcription start site region 60631			763 bp upstream
Tssr60632	transcription start site region 60632			717 bp upstream
Tssr60633	transcription start site region 60633			687 bp upstream
Tssr60634	transcription start site region 60634			678 bp upstream
Tssr60635	transcription start site region 60635			606 bp upstream
Tssr60636	transcription start site region 60636			507 bp upstream
Tssr60637	transcription start site region 60637			243 bp upstream
Tssr60638	transcription start site region 60638			200 bp upstream
Tssr60639	transcription start site region 60639			148 bp upstream
Tssr60640	transcription start site region 60640			92 bp downstream