rs39549863 SNP Detail

Summary

• ID
  rs39549863
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:70094188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAGGCAG CTGGTGAAAT
  TCTCAAGGAG GTTTGTGTAG GAGGCTGAAG CACTGTGGGA GGATAGCTAT AATATTGCTG
  ACAGTAATAA ACTGCCAGGT CTTCAGCCTT CACACTGCTG ATGGTGAGAG TGAAATCTGT
  CCCAGATCCA CTGCCTGTGA AGCGATCAGG GACCCCAGAT TCCCTAGTGG ATGCCCAGTA
  R
  ATCAGCAGTT TAGGAGACTG CCCTGGTTTC TGCTGGTACC AGGCCAAGTA GTTCTTTTGA
  TTGCTACTAT ATAAAAGGCT CTGACTGGAC TTGCAGCTCA TAGTAACCTT CTCTCCAACT
  GACACAGCTA GGGAGGATGG AGACTGTGAC ATCACAATGT CCCCACAGGT ACCTGAAATA
  AGTAGAAAGT GAACATGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss51681348	NES14824730	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs39549863					SNP	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51681348	NES14824730	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70094188 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Igkv8-30	immunoglobulin kappa chain variable 8-30	Coding-Synonymous
Rr379563	regulatory region 379563	1191 bp upstream
Tssr61309	transcription start site region 61309	427 bp downstream