rs39388717 SNP Detail

Summary

• ID
  rs39388717
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70094991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATATCA GCTTATAGCT
  CTTCAACAGC AAAGTACTAG GTGCTCTAAC AGCAGCATTC AGTTAAAATC AAAGACATTT
  AAGTCAGTTA ACTTTTGAGG AGAGTTACCT CAGATTGACA GTCTTAGGGT GATTATTTTA
  AAAAAAAAAT CACAGAAACA AAAAAAAAAA AACATAGAAG AAAACATGCA ATAAAAGATA
  R
  TAAGGGTAGA ATCTGGGAAA GAGGAAATGC AAAAAATAAA AATTATAAAA AAAAAGGAAA
  TGGGAGCTAA ATTTGTTCAG TATCTCCCAT CTCCTAAGAC ACCTATTCTG AAGCCTATGA
  ACAGTGCGTT GGACATTGTG TTTACAGACT AAAAATGGGA CTGATATGAA AAGAGAAGCT
  CAGAATTTAT TCTGTGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51681309	NES14824748	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39388717					SNP	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51681309	NES14824748	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70094991 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Igkv8-30	immunoglobulin kappa chain variable 8-30	390 bp upstream
Rr379563	regulatory region 379563	388 bp upstream
Tssr61309	transcription start site region 61309	350 bp upstream