rs39362216 SNP Detail

Summary

• ID
  rs39362216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65175522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCA TACCCTTTCT TTCCCTTTTG
  Y
  TCTGTCTGGG GCCCAGCCCA CATTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss50435868	NES13449465	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	T	C	T	C
ss147305501	ENSMUSSNP1540256	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs39362216					SNP	C	T	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50435868	NES13449465	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65175522 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm41756	predicted gene, 41756			within coordinates
Gm56499	predicted gene, 56499			1745 bp upstream
Nedd4l	neural precursor cell expressed, developmentally down-regulated gene 4-like			Intron
				Noncoding-Transcript-Variant
Rr539431	regulatory region 539431			1756 bp distal
Rr539432	regulatory region 539432			1565 bp distal
Rr539433	regulatory region 539433			411 bp proximal
Rr539434	regulatory region 539434			1052 bp proximal
Tssr153684	transcription start site region 153684			1741 bp upstream
Tssr153685	transcription start site region 153685			1710 bp upstream