rs39309293 SNP Detail

Summary

• ID
  rs39309293
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:84993900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACCCTG ACTCAAAAAA
  AAAAAAAAAA AGTTGAAATC TAAAGCACAC AAATCTAAAT GAAGGAATGT AGAAAGTGCC
  CTATAGTTCC CATGTTCTGG AAACTTACAG TACTCCCTGG TTCTGGGTGA ACTCTTTGTG
  TACATGCAAG GGAAAAGGAT ACACAGTTTC CATGTAGCTA TGAGACAGGT GAAAATATAT
  K
  TACTTGCATT TTGTGTCTTT AATTACAAAT TGCTTCTATC ACAGTAAAAA GCAATGTGAA
  CATAAACCAT AAAGACTCAG CATTTCAAAT ATATTTCAGC ATAAGTCATC AATAACCAAC
  AGGCCTATCA GATACAAAAG GCAAAAACAA ATAAATAAAC AAGTCTTAAA CTGGAAAAGT
  TCGAGATCTA CTAAATTAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51357269	NES13739646	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39309293					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51357269	NES13739646	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84993900 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Exoc6b	exocyst complex component 6B			Intron
				Noncoding-Transcript-Variant
Rr633107	regulatory region 633107			180 bp proximal
Rr633108	regulatory region 633108			275 bp proximal