rs39278388 SNP Detail

Summary

• ID
  rs39278388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:45888039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTGCTGG CCTTGATCAG
  CATCCCAGAA AGAAGTGTCT GCTGGGAAAC CTAGGCCCCA GGATGATCCA TCTTATCTGG
  AACAAACAAT TTCAAACAGG GGAGACCACA CAGCCCCGTG GGGCTGCAGC AATTTCCTCA
  CTCCAAAGCC CCCCCCTATA AAGGGTTCCT CAGTTTCCCA GAGGAGGGAG GCTAATCCCC
  R
  CTGTGTGTGC TAACCAACAG CCTCCTCTGA GGAGCGGACT CTGCCCTCTC TTTGCCTCCT
  AGCACCCTTT CCTCCCTCAA TCATAGCACT TACAACAGTA CTGTGAATAG ATGAGCTCCT
  AACAGACTTC ATTAACTCAC AGGAGGCAAG AGAAAGAGAG GGCAGAGCAG GAGGAGTAGA
  GAAAGACATG GCTCCTAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50833106	NES13519715	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39278388					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50833106	NES13519715	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:45888039 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Armh3	armadillo-like helical domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr548612	regulatory region 548612			1331 bp proximal