rs39230567 SNP Detail

Summary

• ID
  rs39230567
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120679845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCATCG GTTTCACGAT
  GTACACTCAA AAATTAGCAA GGCGTACCAT ATGTTTTGAA TGCACAGACC CCACTAGCCT
  GTCTTGAAAA GCCCCTGTTC ACGCTCAAAG GAAACTTGCA AGTTTGAAAA GCAGGAAGTA
  GCCCCTAGCC TAGATATACA GACTGTAGGA TGGGAAAGGC CGCTGGGATG CAGCTCCCTG
  S
  GAAGCAGAAG GGACTCCAAA CAACCCTAGT AGTGTAAAGA AGAGAAGAAG CCGGTCCAGC
  AGCAGCTCAG GCACAGAGCC TGTTCCCAGT CTCCCACCTG CCAGAACACA TAGCCAGAGT
  GGTGGTATCC CTATAAGGCA CTCCGCTCCA CATGCTGGTA AGTTGTTTCT GTGGACTCTG
  GGTCACTTCT AGGTACCACG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss51608903	NES14656087	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs39230567					SNP	C	C	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608903	NES14656087	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120679845 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	within coordinates
Rr583992	regulatory region 583992	within coordinates
Rr583993	regulatory region 583993	366 bp proximal
Tssr35394	transcription start site region 35394	532 bp downstream