rs39188004 SNP Detail

Summary

• ID
  rs39188004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123178645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAACTT GTAGTATGTA
  TTCCCTGCAT GAATGGTCTA CTAAACGGCA AGCACTCACA TCTTCATTCA CTAGCTTCAA
  TGAAAGCGAA AGGTTTGAAA AGTAATCTCT AGAGAGAGGA ATCTTAGAGA ATTCTCTGGT
  GAGGGCTGGC TAGGGAAAAA CGTTAAAATT TGGAAACCTA GTCCTAATGT ACTAGTGAAC
  R
  TAACACCTCC TGTCTCTAAT AAATTACCAA GTAAGGATTC AAACGTTTGG TTGAAGGTAG
  ACTGTGTTCT AAGTGCAGAA TCTAAAATTT GCTCTAACTT AGGTGGCTTC CAATGAGTCT
  TTCGACAGGA TCTCAAGAAA ATAATCAAAC TTCCTTCAAA ACCAATATCA AGAAAAGATT
  AAGAACATGC ACTGCTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51023290	NES13907606	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39188004					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023290	NES13907606	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123178645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	730 bp proximal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	Intron
Rr397990	regulatory region 397990	756 bp upstream
Rr584510	regulatory region 584510	188 bp proximal
Rr584511	regulatory region 584511	925 bp proximal
Tssr35499	transcription start site region 35499	672 bp downstream
Tssr35500	transcription start site region 35500	929 bp downstream
Tssr35501	transcription start site region 35501	998 bp downstream