rs39122105 SNP Detail

Summary

• ID
  rs39122105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:83899985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAATAAAA TTACAAGCTA
  GAATCTTATC CTTCTTTAAG TAAGTTTGCA GTTTTGTGGC TGGGCGGGTC ATATGAAGCC
  TGTAAGGCTC AGGACAGACA TATACCTGGA GGAAGGACTG TCTTTCAATA TGTAAAGTTT
  GGTATACTTG TCCCCCATCC CACATCATCC CTAAGACAAC TGCTCCCCGT TTCTGGCTTT
  Y
  AGTACCTGAG AATAGGTCCT ACAGGTTACA GGAAATAGAG ACTGCACGCT GCAAGGAGCC
  CGGCGCTAAG AAGCTCCTCA ATCGGACCAG TACTTGCAGC ACACACAAAG CATAAGCCAG
  GCGACCGACC AGCAGCCGCA GGGCTGGGTG AGGGCTGACA GAGCATGTGA TAATCATACT
  CACAGACACA CTTCAATATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51569597	NES14675069	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs39122105					SNP	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569597	NES14675069	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83899985 () rs orientation: forward

Symbol	Name	Function Class
Rr578944	regulatory region 578944	274 bp distal
Rr578945	regulatory region 578945	91 bp proximal
Rr578946	regulatory region 578946	783 bp proximal
Rr578947	regulatory region 578947	1362 bp proximal
Tmem131l	transmembrane 131 like	Intron