rs39058202 SNP Detail

Summary

• ID
  rs39058202
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:62303167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAATGAG CCTCTCCTCT
  GTGAAGGGCT GATGCTTATC CGAATAACCC CAGGACCCAA AGCGCTGACT CTCTGGTCTT
  TATTGAAACA GCGTTATCAC CAGTTCCAAC TGGAGAATTC TGCATTACTG GCTGTGCCTT
  TCTCGGTTGT AAATTCTTCC AGTGGTATGT GGGTCAGAAC AGTGAGCCTC ACAGAGATGG
  S
  ACTGGCAAAC TTTACCCAGG GCTCTGCTGT GTGTCTTATA TTAGGCCCTG AAAGTGGTGG
  AAGCCTTCGG GATGTCTTGA AAAGTATAGC TATATGTATC ACAATAATAC TTTTACAATT
  AGGGATTAGT TTGAGAGAGC AGATGGCCAT AAAGCACTGG TTGTCAACCT TTCTAATACT
  GCAACTCATT ACAGTTCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51531911	NES14683653	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39058202					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51531911	NES14683653	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62303167 () rs orientation: forward

Symbol	Name	Function Class
Arhgef26	Rho guanine nucleotide exchange factor 26	Intron
Rr577516	regulatory region 577516	1123 bp distal
Rr577517	regulatory region 577517	within coordinates
Rr577518	regulatory region 577518	353 bp proximal
Tssr889	transcription start site region 889	676 bp upstream