rs39037751 SNP Detail

Summary

• ID
  rs39037751
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87415536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCC TCTTACTCGA TAGTGACAAC
  K
  GTATATCTCA CTACTGAATC ACTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss51577817	NES14674288	PERLEGEN	MM_PANEL2	f	SNP			G		T	G	T		G
ss135463128	ENSMUSSNP1047433	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320833951	CHEV_3_87312151	CHEVERUD	SCREENING_POP	f	SNP				G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs39037751					SNP	G	G	G	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51577817	NES14674288	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87415536 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	within coordinates
Rr397759	regulatory region 397759	1453 bp downstream
Rr397760	regulatory region 397760	7 bp upstream
Rr579500	regulatory region 579500	970 bp distal
Rr579501	regulatory region 579501	within coordinates
Rr579502	regulatory region 579502	108 bp proximal
Rr579503	regulatory region 579503	174 bp proximal
Rr579504	regulatory region 579504	709 bp proximal
Rr579505	regulatory region 579505	904 bp proximal
Rr579506	regulatory region 579506	934 bp proximal
Rr579507	regulatory region 579507	1210 bp proximal