rs39027909 SNP Detail

Summary

• ID
  rs39027909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:41522787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCATTAT GGATTGCAGA
  TTAAGATCCT GTCCACCCCA CCCCCTAAAA ATCCAAAGAA AGAAAAGAAA ACTATAGAGA
  CTCCTACCAA AAAGAATCAG AATTCCAGCA TGATGGCCGA AGAGTTTGAA GCCAAGCACT
  AAGCTTGTGA TCTTGTATAA GGTCTGTGCA GGTTCTTTTA CCGTTGTTTC AAGACCAGAA
  R
  TAAAGCGATA TCCACAGAAA TAGGAGAAAG GATCAAAATA AAGTTTCTCC ATTATCCAGA
  AGGCCGTGGG TTGCTAACAC AAAATATATC TATCTCTTTA TCTTCAGCAA ATCACTTGGA
  AGCAAAGAAC AGAGAGAAAG TCACAAAGAA CTGGGAATGT TTAGAGGCAG AGAAGTTGAT
  AGGTTTATTT CACACACCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51624282	NES14839694	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39027909					SNP	G	G	G	G	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51624282	NES14839694	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:41522787 () rs orientation: forward

Symbol	Name	Function Class
Gm68244	predicted gene, 68244	1563 bp upstream
Gm68268	predicted gene, 68268	246 bp upstream
Rr629250	regulatory region 629250	1809 bp distal
Rr629251	regulatory region 629251	1073 bp distal
Tcrb	T cell receptor beta chain	within coordinates
Trbc2	T cell receptor beta, constant 2	877 bp upstream
Trbj2-7	T cell receptor beta joining 2-7	1997 bp downstream
Tssr1821	transcription start site region 1821	963 bp downstream
Tssr1822	transcription start site region 1822	1667 bp upstream
Tssr55944	transcription start site region 55944	1824 bp downstream
Tssr55945	transcription start site region 55945	1333 bp downstream
Tssr55946	transcription start site region 55946	1020 bp downstream
Tssr55947	transcription start site region 55947	836 bp downstream
Tssr55948	transcription start site region 55948	224 bp upstream
Tssr55949	transcription start site region 55949	410 bp upstream
Tssr55950	transcription start site region 55950	717 bp upstream
Tssr55951	transcription start site region 55951	1444 bp upstream
Tssr55952	transcription start site region 55952	1491 bp upstream
Tssr55953	transcription start site region 55953	1527 bp upstream
Tssr55954	transcription start site region 55954	1575 bp upstream
Tssr55955	transcription start site region 55955	1600 bp upstream
Tssr55956	transcription start site region 55956	1641 bp upstream
Tssr55957	transcription start site region 55957	1929 bp upstream
Tssr60576	transcription start site region 60576	1574 bp upstream
Tssr60577	transcription start site region 60577	1484 bp upstream
Tssr60578	transcription start site region 60578	1463 bp upstream
Tssr60579	transcription start site region 60579	996 bp upstream