rs39011099 SNP Detail

Summary

• ID
  rs39011099
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123179039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGCTCACG TGCACATATA TATATACACA CAGAGAGACA
  AACCCCACAT AATTTAAAAT AAAAACTAAT CTTAAAAAAA ATAAAGAATC TGAAGCTGAC
  K
  CGGGAGAAAG GCAAGACATG AAACACTGCT TCAACAGTGA CGGTGAAATG TAAGGGCTAA
  AACTGCCACT TGCTCTTGTA GCAACTACTA GCACTGCAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51023280	NES13907548	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	G	T	G	T	G	G		T	G	G	T		G
ss320919480	CHEV_3_123088308	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39011099					SNP	G	T	G	T	G	T	G	T	G	G	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023280	NES13907548	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123179039 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	336 bp proximal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	Intron
Rr397990	regulatory region 397990	362 bp upstream
Rr584510	regulatory region 584510	within coordinates
Rr584511	regulatory region 584511	531 bp proximal
Tssr35499	transcription start site region 35499	278 bp downstream
Tssr35500	transcription start site region 35500	535 bp downstream
Tssr35501	transcription start site region 35501	604 bp downstream