rs38907925 SNP Detail

Summary

• ID
  rs38907925
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87416874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTG TTCTTATGAG GATTTGACCA
  S
  TGCCAGCCAC CTCAGGGGAG ACCAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss51577802	NES14674294	PERLEGEN	MM_PANEL2	f	SNP		C		G	C	G		C
ss135463155	ENSMUSSNP6024107	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320833956	CHEV_3_87313489	CHEVERUD	SCREENING_POP	f	SNP			C				C
SNP Consensus Information
SNP					Consensus Type	A/J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs38907925					SNP	C	C	C	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51577802	NES14674294	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87416874 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	within coordinates
Rr397760	regulatory region 397760	1030 bp downstream
Rr579501	regulatory region 579501	1052 bp distal
Rr579502	regulatory region 579502	1209 bp distal
Rr579503	regulatory region 579503	1143 bp distal
Rr579504	regulatory region 579504	129 bp distal
Rr579505	regulatory region 579505	413 bp distal
Rr579506	regulatory region 579506	383 bp distal
Rr579507	regulatory region 579507	within coordinates