rs38771928 SNP Detail

Summary

• ID
  rs38771928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:46198293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAGGTTC TCATTGTTTG
  CAAACCAGAT TCTTTGCAAT CCTTTAATTC TGTATTCAGG ATTCATATAT CCATTTTAGG
  CCATGATAAA CCTTAAAATT ACATGGTCGC AATATTATTA TATGTGAAAA TTAATGTTTG
  GTATATGTTC TAGTTGTAGA TTGAGTCCCT CAGATGTAGA TATTTAACAA ATGTCAGCCT
  R
  TTGAAATTCA AACAGTGCTC AGACCTCTCA TTACTACATT TCAGGTACTC TGTTTTAGAA
  CTGAGATAAT GTCGACCATG CATGTGGTTC TGGGCTGAGT ATGTTTACGG GCGGTTTGGT
  TTGCTTCACA CTCGAGTTAA TTTCAACATT GTTTTTCTTT CAGGGCGTGA GTCTCAGTCT
  CCAGATTCAG GTACAGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50535123	NES14089815	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38771928					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50535123	NES14089815	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:46198293 () rs orientation: forward

Symbol	Name	Function Class
Sorbs2	sorbin and SH3 domain containing 2	Intron
Sorbs2os	sorbin and SH3 domain containing 2, opposite strand	within coordinates
Tssr77160	transcription start site region 77160	1361 bp upstream
Tssr77161	transcription start site region 77161	1414 bp upstream