rs38729535 SNP Detail

Summary

• ID
  rs38729535
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:118281228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCATGA TGCTCCAGGA
  GAAACAAAAC ACAGATTCTG TGGGATTGGG TGAAGGGGTG CAAATGTGTG GCAGAAGCCT
  CCTGACTTCT AAGGAAAGAA GCAGAGGCAC CAGGTGCCCA AGAAGCTGGC CTGCTTCCCG
  CAGGCCAGCC AAGCCTCCTC AACACCCGGG GTGGAGAAGT ACTGACCAGG TCACTAACAC
  K
  TTCTTATGGG GAGAGAGCAG GGTGGAGGCT GCTCAGCTGG AGGGCAGGCC CGTCTCTTCT
  CAGGAAAGGA GTCCTGCTGG TTAACCTGAG CTAGCCAGGA CAAACAAAGC TGTTCTCCAG
  TGTTATTTAG TAAAGCACAG CAACAAGAGC TCGCCTGCCC TAGGGGAAGC AATCAGAGAT
  GAGGTAAGGA GCTTCAGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51188645	NES13833111	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38729535					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51188645	NES13833111	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118281228 () rs orientation: forward

Symbol	Name	Function Class
Fbxw8	F-box and WD-40 domain protein 8	Intron
Rr618824	regulatory region 618824	within coordinates