rs386955710 SNP Detail

Summary

• ID
  rs386955710
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:156266988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GGGAGGGGAG GGGAGAGGAG
  R
  GGAGAGGAGA GGAGAGGAGA GGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ
ss916534695	MGP_WTSI_3_156561351	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ
rs386955710					SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916534695	MGP_WTSI_3_156561351	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:156266988 () rs orientation: forward

Symbol	Name	Function Class
4930570G19Rik	RIKEN cDNA 4930570G19 gene	within coordinates
Cpgi13974	CpG island 13974	within coordinates
Negr1	neuronal growth regulator 1	mRNA-UTR
Rr587959	regulatory region 587959	within coordinates
Rr587960	regulatory region 587960	292 bp proximal
Rr587961	regulatory region 587961	629 bp proximal
Rr587962	regulatory region 587962	754 bp proximal
Tssr32476	transcription start site region 32476	441 bp upstream
Tssr32477	transcription start site region 32477	599 bp upstream
Tssr32478	transcription start site region 32478	744 bp upstream
Tssr32479	transcription start site region 32479	790 bp upstream
Tssr32480	transcription start site region 32480	1320 bp upstream
Tssr32481	transcription start site region 32481	1434 bp upstream
Tssr36286	transcription start site region 36286	396 bp downstream