rs38569666 SNP Detail

Summary

• ID
  rs38569666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:59401658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCCTCTC CAACCACAGT
  TGACCTGATT CAGTTAGTTC CTCAGCCCTC TATCCTGTGA GGGTGCCATG TTGTGCCATG
  CCATGTCCAC AACAGTACTT GGTGATTAGG TCTTGGCACA TCACAGCAGA TCCTCATTTG
  CTGTGTCTCC TTGAGTCCCT GGTATGTTTC TGGAACTCCT TTTAATGACT GAACATCCTG
  Y
  CTGGTGATAG GAGTGATGAT TGATACGTTG TTTTCCTGTT TACAATCAAT ACAGTTGTTC
  CACTAAACAC ATGCACACAC CCATGGGGCA CACAGACTCG ACCGAAACCA AACACATTCT
  CTGTGACTCT TTGTCAGAGA ACATTATCTA TGAATACTCT GTCCATTGGA GGAGAGCAAT
  AGAGAAGACT TCTTTGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51662601	NES14827368	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38569666					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51662601	NES14827368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:59401658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17493	CpG island 17493	1348 bp proximal
Gprin3	GPRIN family member 3	Intron
Rr631269	regulatory region 631269	42 bp proximal
Rr631270	regulatory region 631270	1611 bp proximal
Tssr61184	transcription start site region 61184	1606 bp downstream