rs38541630 SNP Detail

Summary

• ID
  rs38541630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113410772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGAGGA TGTGAGTCTG
  GGGCTTTCTG GGTTCAAGTT CAAAGTTTGT CTTTGCTACA GAGTTGCTAG GCGACAGGTG
  ACAGAATGCT CAGCTTGCCA GTTTCCCCAT CTATTGACTT GACATATTAG CCCCCACTCC
  CCAGTGTAGG CATGAGGCTC CTGGGAGATC AGCAATGAAG GTGCCCAGTG CAGAGCCTGG
  Y
  CCTCTCTACT CCAGATATGA CAGGAACCAC AATGGTGGCA CTCGAGAAGA GTGTAACCTG
  GCACTTGTCC AGACTGCAGG CTTGGACACC ACTGTAGGCA GCTCAGATCT AAATCAGATC
  TGTCACGGCT TATGGTAAGA TTTTTTTTTT TTTTGCTTGT TTTGTTTTAA TGGATTCTCT
  GCTTGCTTGT CTGTTTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51841535	NES14768354	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38541630					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841535	NES14768354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113410772 () rs orientation: forward

Symbol	Name	Function Class
Cidec	cell death-inducing DFFA-like effector c	Intron
Gm52871	predicted gene, 52871	1071 bp upstream
Rr636516	regulatory region 636516	943 bp proximal
Tssr58211	transcription start site region 58211	1081 bp upstream
Tssr62446	transcription start site region 62446	1820 bp upstream
Tssr62447	transcription start site region 62447	688 bp downstream
Tssr62448	transcription start site region 62448	718 bp downstream
Tssr62449	transcription start site region 62449	946 bp downstream
Tssr62450	transcription start site region 62450	966 bp downstream
Tssr62451	transcription start site region 62451	989 bp downstream
Tssr62452	transcription start site region 62452	1937 bp downstream