rs38494095 SNP Detail

Summary

• ID
  rs38494095
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123179760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCAGGACG CCGAAGATAT GATGTCACAC GACGAGACCC
  AATGGGGATG TAGTGGTGGT TGAGGGCGAG GAGCCGCTTT TGGCTATCTT CTTAGTGCTT
  W
  AAGTCTTTCC TGAAGGGTTA GGCTCGGTTT TTTTGTTTTT TGTTTTTCCT GCTCATAAAA
  GAAGTTTTTC TTTTTCCCGT TAACCAATTG TCCGCCTGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51023258	NES13907563	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	T	A	T		A	A		T	A	A	T		A
ss135764374	ENSMUSSNP1647705	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T					T
ss320919494	CHEV_3_123089029	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38494095					SNP	A	A	?	A	T	A	T	T	A	A	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023258	NES13907563	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123179760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	43 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	121 bp upstream
Rr397990	regulatory region 397990	58 bp downstream
Rr584510	regulatory region 584510	191 bp distal
Rr584511	regulatory region 584511	within coordinates
Tssr35499	transcription start site region 35499	439 bp upstream
Tssr35500	transcription start site region 35500	118 bp upstream
Tssr35501	transcription start site region 35501	101 bp upstream