rs38437372 SNP Detail

Summary

• ID
  rs38437372
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:45888519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGGCAAC AGATTTGTTC
  CTGTGATGAC TTCTGATAGT CAGGATCCCT GGGAGTCAGA GTTAGGGATG ACAACGTAAT
  AAGAAGAAGA GCGTAATTCT AGCACAAGCC AACAGGCAAT TTGTGTCCAA ACTGATGCAA
  ATACAGGCAG AGCAAATCAG TAGGGAAGAC AGGCTAGCGC GGATGCTTGA ATGTATGCTA
  S
  ATGCTTTGTG TGTAAGTACT GCAGAGACAT GTTTGTCCCT GTGATTCAGG TCACACGTCA
  CTCTCCTCTG GACTCCCACC ATGTTGCCTA AGACCATCAG AAAACACAGA TAGTTATATT
  ATGATTCATA ATCGTAGCAA AATTACAGTT ATGTAGTTGC AACAAAAATA ATTTTATGGT
  TGGGGGTTAT CACAACATGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50833080	NES13519734	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C	C	G		G	G	G	G		G
ss325821549	CHEV_19_45974570	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38437372					SNP	C	C	G	C	C	C	C	C	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50833080	NES13519734	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:45888519 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Armh3	armadillo-like helical domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr548612	regulatory region 548612			851 bp proximal