rs38392549 SNP Detail

Summary

• ID
  rs38392549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:84861688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACAAAAC TAAAGACAGT
  AGTTCCCCTG TCCCAGAATC CGCCCAGTAG CCTACAGTTT AGCAGTAGAG GTAGGGTCCC
  ATGAGCCACT CCCCTATTCA CAGCTGACTG CTCAGGGGCC TTGTCTTGTG GAGGACCAGT
  ACAAGGAATT GCAGCTGCTT TGAGTCCACG ACTGCACGGT TTTGTTGTGT CTAAAGGATG
  R
  GATTTCACTA CCCTTCTTCA AGCTTTTACA TGCTAGCTTC AGATGTGACA GTGTAAATGA
  CGAGTTGGGA GCTGAGCCAT CATCTAACAC TCGCTGCTGT CTTTCAGTCT TTACAGAATC
  AAGAAGTTGA GAATAAGTAA GACTGCTAAA GCTAATCATT TTGTTGAATT TACAACTCCA
  ATAGGGTCAC AAACTTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51730222	NES14805919	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38392549					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51730222	NES14805919	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84861688 () rs orientation: forward

Symbol	Name	Function Class
Exoc6b	exocyst complex component 6B	Intron
Rr633093	regulatory region 633093	783 bp distal
Rr633094	regulatory region 633094	317 bp proximal
Rr633095	regulatory region 633095	1819 bp proximal